[gmx-users] Regarding viewing Trajectories

Dilip H N cy16f01.dilip at nitk.edu.in
Wed Apr 5 06:38:38 CEST 2017

In RDF of amino acid with ammonia and water mixture, i have got a 1st peak,
2nd peak (solvation shell), and i need to view this in the vmd by making
use of the trajectories (trr/xtc files), so while viewing the trajectories

1] how can i view that exact trajectory at which i have got the particular
peak in RDF (since that would mean either H-bond formation/probability of
tht molecule close to that)
because viewing each frame to find it would take literally lot of time, ...

Thank you.

With Best Regards,

Ph.D Student

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