[gmx-users] Regarding gmx sorient

Dilip H N cy16f01.dilip at nitk.edu.in
Sat Apr 8 07:35:14 CEST 2017

I have done md simulation of amino acid in solvent mixture, How can i
calculate the gmx sorient..??
I am not able to understand anything in the link

Is it like for calculating the RDF,(in which we have to first index the
files and thn in gmx rdf  command give -ref and -sel  in end) ..??

How can i calculate it.. what are the steps i need to follow in brief .. is
there anything tht i need to index, etc..,,??

With Best Regards,

Ph.D Student

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