[gmx-users] Fatal Error - XTC error - maybe you are out of disk space?

[Justin Lemkul]

On 4/16/17 9:16 PM, Kelechi Okoroafor wrote:
> Thank you so much, Christopher.
> The simulations were running on my personal computer, specifically
> /media/OkwuchisHDD
> The command "df" returns:
>
> ***********************************
> Filesystem      1K-blocks       Used  Available Use% Mounted on
> udev              8172656          0    8172656   0% /dev
> tmpfs             1639200       9736    1629464   1% /run
> /dev/nvme0n1p3   60904492   14948332   42839260  26% /
> tmpfs             8195988     231540    7964448   3% /dev/shm
> tmpfs                5120          4       5116   1% /run/lock
> tmpfs             8195988          0    8195988   0% /sys/fs/cgroup
> /dev/nvme0n1p1     523248       3540     519708   1% /boot/efi
> /dev/sda       2930266584 1782916996 1145615164  61% /media/OkwuchisHDD
> tmpfs             1639200         72    1639128   1% /run/user/1000
>
> ******************************
>
>

This error also comes up if the filesystem is momentarily unresponsive when 
mdrun is trying to write.  Depending on your settings, perhaps your machine 
simply can't handle the I/O burden of the simulation.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

==================================================