[gmx-users] PBC problem

Albert mailmd2011 at gmail.com
Fri Apr 21 14:57:18 CEST 2017


I try to visualize a .gro file from Martini simulation. However, I 
noticed that the lipids always above the water molecule and my protein 
split into two. Even after I run the following command:

gmx trjconv -s dppc-md.tpr -f dppc-md.gro -pbc whole -dump 0 -o 

The issue is still there.

Here is a snapshot for my problem:


Does anybody have any idea how to solve this problem?

Thank you very much.


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