[gmx-users] Gcc

[Anshul Lahariya]

hello rahul,
can u tell me how to make movie??


On Fri, Apr 21, 2017 at 3:12 PM, João Henriques <
joao.m.a.henriques at gmail.com> wrote:

> ​Plus, installing multiple version of the same software (e.g. gcc) is not
> problematic at all *when done by someone that knows what he/she is doing*.
> Furthermore, I completely disagree with Vytautas Rakeviius final advice. It
> wouldn't cross anyone's mind to change OS in order to use a different gcc
> version. That is ludicrous. I obviously don't recommend that an
> inexperienced user should start compiling stuff blindly on their machine,
> but that is just plain bad practice and impractical.
>
> But I digress, this is not really GROMACS related.
>
> A nice weekend to everyone!
> João
>
> On Fri, Apr 21, 2017 at 11:21 AM, João Henriques <
> joao.m.a.henriques at gmail.com> wrote:
>
> > You have (at the very least) three solutions regarding the movie:
> >
> > [1] Use gmx trjconv (see http://manual.gromacs.org/documentation/5.1.4/
> > onlinehelp/gmx-trjconv.html) to generate a PDB file with the desired
> > trajectory frames. Load and play it in PyMOL et voilà!
> >
> > [2] Install the GROMACS plugin for PyMOL, which will allow you (among
> > other things) to directly read the trajectory files without having to
> > resort to gmx trjconv (see https://pymolwiki.org/index.
> php/GROMACS_Plugin
> > ).
> >
> > [3] Use VMD which can read GROMACS trajectory output files straight out
> of
> > the box (see http://www.ks.uiuc.edu/Research/vmd/).
> >
> > For details regarding gmx trjconv please read the documentation. It is
> > fairly trivial and only you know exactly what system you have at hand.
> Some
> > options will vary depending on that.
> >
> > - - -
> >
> > Regarding gcc, depending on your operating system you can either use a
> > package manager to install the desired version of gcc or compile it
> > yourself. After installing it don't forget to make sure GROMACS knows
> where
> > to search for it, using the -DCMAKE_C_COMPILER=/path/to/gcc flag when
> > running cmake (and probably also -DCMAKE_CXX_COMPILER=/path/to/c++).
> > These paths are obviously fictitious and need to be changed with the
> right
> > ones.
> >
> > Best regards,
> > João
> >
> > On Fri, Apr 21, 2017 at 10:47 AM, Anshul Lahariya <
> > anshullahariya17 at gmail.com> wrote:
> >
> >> okkk. it's fine...
> >>
> >>
> >> On Fri, Apr 21, 2017 at 1:06 PM, RAHUL SURESH <drrahulsuresh at gmail.com>
> >> wrote:
> >>
> >> > I am out
> >> > Can I say that to u on Monday.) ?
> >> > On Fri, 21 Apr 2017 at 10:28 AM, Anshul Lahariya <
> >> > anshullahariya17 at gmail.com>
> >> > wrote:
> >> >
> >> > > yes rahul, i use pymol but dont know how to make movie
> >> > >
> >> > >
> >> > > On Fri, Apr 21, 2017 at 10:09 AM, RAHUL SURESH <
> >> drrahulsuresh at gmail.com>
> >> > > wrote:
> >> > >
> >> > > > You must use pymol
> >> > > >
> >> > > >
> >> > > > On Fri, 21 Apr 2017 at 6:35 AM, Anshul Lahariya <
> >> > > > anshullahariya17 at gmail.com>
> >> > > > wrote:
> >> > > >
> >> > > > > thanks rahul
> >> > > > >
> >> > > > >
> >> > > > > and how to make md movie for 5ns by command.??
> >> > > > >
> >> > > > >
> >> > > > > On Thu, Apr 20, 2017 at 5:54 PM, RAHUL SURESH <
> >> > drrahulsuresh at gmail.com
> >> > > >
> >> > > > > wrote:
> >> > > > >
> >> > > > > > Yum apt-get gcc version
> >> > > > > > Yum update
> >> > > > > > Yum upgrade
> >> > > > > > Yum install
> >> > > > > >
> >> > > > > >
> >> > > > > > On Thu, 20 Apr 2017 at 5:23 PM, Mark Abraham <
> >> > > mark.j.abraham at gmail.com
> >> > > > >
> >> > > > > > wrote:
> >> > > > > >
> >> > > > > > > Hi,
> >> > > > > > >
> >> > > > > > > That's a good question for google or the forums of your
> >> operating
> >> > > > > system,
> >> > > > > > > not here. :-)
> >> > > > > > >
> >> > > > > > > Mark
> >> > > > > > >
> >> > > > > > > On Thu, 20 Apr 2017 12:42 Anshul Lahariya <
> >> > > > anshullahariya17 at gmail.com>
> >> > > > > > > wrote:
> >> > > > > > >
> >> > > > > > > > hello,
> >> > > > > > > >
> >> > > > > > > > I want to change my gcc and want to install gcc version
> >> later
> >> > > than
> >> > > > 5.
> >> > > > > > > > what can i do so i can change the version of gcc to
> >> gcc-4.9.4
> >> > > > > > > > --
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> >> > > > > > *Regards,*
> >> > > > > > *Rahul Suresh*
> >> > > > > > *Research Scholar*
> >> > > > > > *Bharathiar University*
> >> > > > > > *Coimbatore*
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> >> > > > *Regards,*
> >> > > > *Rahul Suresh*
> >> > > > *Research Scholar*
> >> > > > *Bharathiar University*
> >> > > > *Coimbatore*
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> >> > *Regards,*
> >> > *Rahul Suresh*
> >> > *Research Scholar*
> >> > *Bharathiar University*
> >> > *Coimbatore*
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