[gmx-users] How to Identify clusters

Mark Abraham mark.j.abraham at gmail.com
Mon Aug 7 19:56:13 CEST 2017


The gromacs documentation pages list all the analysis programs available,
along with a summary of what they can do. Each tool has its own
documentation, too. Exploring that will tend to get you a useful answer
sooner than emailing! Or at least a more focussed question.


On Sun, 6 Aug 2017 16:54 Sameer Edirisinghe <nootsam at gmail.com> wrote:

> Dear all,
> I need to identify clusters in my polymer system. I have 200ns simulation
> trajectory and using this how can I identify the clusters existing in my
> system over the time? Need to find which molecules form the cluster. Can
> anyone suggest a method to do this?
> Regards
> Bhagya Karunarathna
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