[gmx-users] Use of providing -ix pullx.xvg in WHAM

jay patil jpatil911 at gmail.com
Sat Aug 19 17:35:29 CEST 2017


Thanks Justin.

Yogesh

> On 18-Aug-2017, at 10:28 PM, Justin Lemkul <jalemkul at vt.edu> wrote:
> 
> 
> 
>> On 8/17/17 9:38 AM, jay patil wrote:
>> Hello Experts,
>> What property we can calculate by providing -ix pullx.xvg through gmx WHAM command. Like -if pullf.xvg can give PMF.
> 
> You get a PMF.  There are just two different ways to get it, but that's all gmx wham does.
> 
>> Is there way to calculate diffusivity using WHAM command or any other command.
> 
> Look at gmx msd.
> 
> -Justin
> 
> -- 
> ==================================================
> 
> Justin A. Lemkul, Ph.D.
> Assistant Professor
> Virginia Tech Department of Biochemistry
> 
> 303 Engel Hall
> 340 West Campus Dr.
> Blacksburg, VA 24061
> 
> jalemkul at vt.edu | (540) 231-3129
> http://www.biochem.vt.edu/people/faculty/JustinLemkul.html
> 
> ==================================================
> 
> -- 
> Gromacs Users mailing list
> 
> * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
> 
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> 
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.


More information about the gromacs.org_gmx-users mailing list