[gmx-users] Fwd: Unusual bonding between residues in vmd

ISHRAT JAHAN jishrat17 at gmail.com
Tue Aug 22 12:47:57 CEST 2017

will you please tell me the method of generating the pdb file from the .xtc
file as i have generated it from trjconv after applying pbc but when i open
it in vmd , protein totally broken down.

On Tue, Aug 22, 2017 at 12:37 PM, Nikhil Maroli <scinikhil at gmail.com> wrote:

> Hi,
> You have to load the initial coordinate for the visualisation, not the one
> you generated from current trajectory. Observe whats wrong in the specified
> atom.
> --
> Gromacs Users mailing list
> * Please search the archive at http://www.gromacs.org/
> Support/Mailing_Lists/GMX-Users_List before posting!
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.

More information about the gromacs.org_gmx-users mailing list