[gmx-users] Fwd: Unusual bonding between residues in vmd

[ISHRAT JAHAN]

will you please tell me the method of generating the pdb file from the .xtc
file as i have generated it from trjconv after applying pbc but when i open
it in vmd , protein totally broken down.

On Tue, Aug 22, 2017 at 12:37 PM, Nikhil Maroli <scinikhil at gmail.com> wrote:

> Hi,
> You have to load the initial coordinate for the visualisation, not the one
> you generated from current trajectory. Observe whats wrong in the specified
> atom.
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