[gmx-users] Unable to install 5.1.14

[Rajat Desikan]

Installing version 2016.3 worked perfectly. Thanks!

Regards,
Rajat

On Mon, Aug 28, 2017 at 12:08 PM, Vytautas Rakeviius <vytautas1987 at yahoo.com
> wrote:

> You have updated boost so you have to update GROMACS too. 2016.3 is the
> latest version you should download it.
> Another possibility is to downgrade boost to older, but you can bump into
> other mish-mash issues. I do not recommend that.
>
>
>
> On Sunday, August 27, 2017, 11:36:21 PM GMT+3, Rajat Desikan <
> rajatdesikan at gmail.com> wrote:
>
> Dear All,
> I had removed gromacs 5.1.14. from my system (Ubuntu 16.04) a while ago,
> and I'm having trouble reinstalling it. Cmake runs fine, but the system
> repeatedly fails in the make step with this weird error:
>
> [  3%] Building CXX object src/gromacs/CMakeFiles/
> libgromacs.dir/listed-forces/pairs.cpp.o
> [  3%] Building CXX object src/gromacs/CMakeFiles/
> libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o
> In file included from /usr/local/include/boost/exception/detail/exception_
> ptr.hpp:20:0,
>                 from /usr/local/include/boost/exception_ptr.hpp:9,
>                 from /home/entropy/Downloads/gromacs-5.1.4/src/gromacs/
> utility/exceptions.h:53,
>                 from /home/entropy/Downloads/gromacs-5.1.4/src/gromacs/
> commandline/cmdlineprogramcontext.cpp:62:
> /usr/local/include/boost/exception/info.hpp: In member function ‘virtual
> boost::shared_ptr<boost::exception_detail::error_info_base>
> boost::exception_detail::error_info_container_impl::get(const
> boost::exception_detail::type_info_&) const’:
> /usr/local/include/boost/exception/info.hpp:102:28: error: use of deleted
> function ‘boost::shared_ptr<boost::exception_detail::error_info_
> base>::shared_ptr(const
> boost::shared_ptr<boost::exception_detail::error_info_base>&)’
>                     return p;
>                             ^
> In file included from /usr/local/include/boost/shared_ptr.hpp:17:0,
>                 from /home/entropy/Downloads/gromacs-5.1.4/src/gromacs/
> commandline/cmdlineprogramcontext.h:54,
>                 from /home/entropy/Downloads/gromacs-5.1.4/src/gromacs/
> commandline/cmdlineprogramcontext.cpp:47:
> /usr/local/include/boost/smart_ptr/shared_ptr.hpp:168:25: note:
> ‘boost::shared_ptr<boost::exception_detail::error_info_
> base>::shared_ptr(const
> boost::shared_ptr<boost::exception_detail::error_info_base>&)’ is
> implicitly declared as deleted because ‘boost::shared_ptr<boost::
> exception_detail::error_info_base>’ declares a move constructor or move
> assignment operator
>
> There are similar errors after this, and make fails. I have updated boost
> on my system (version 58), and my system has the latest upgrades. Can
> anyone please point out the way ahead? I've exhausted all easy options (Eg.
> cleanly remove all gromacs associated files, redownload, untar and try to
> install).
>
> My cmake command is:
> cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
> -DCMAKE_INSTALL_PREFIX=/usr/local/gromacs514 -DGMX_USE_RDTSCP=off
>
> I've tried other permutations of the above command (without
> -DGMX_USE_RDTSCP=off
> for instance) and nothing seems to work.
>
> Thank you for your time.
>
> Regards,
> Rajat
>
> --
> Dr. Rajat Desikan (Post Doctoral Fellow)
> Prof. Narendra M Dixit's Lab (no 1),
> Dept. of Chemical Engineering,
> Indian Institute of Science, Bangalore
> --
> Gromacs Users mailing list
>
> * Please search the archive at http://www.gromacs.org/
> Support/Mailing_Lists/GMX-Users_List before posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
> --
> Gromacs Users mailing list
>
> * Please search the archive at http://www.gromacs.org/
> Support/Mailing_Lists/GMX-Users_List before posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.




-- 
Dr. Rajat Desikan (Post Doctoral Fellow)
Prof. Narendra M Dixit's Lab (no 1),
Dept. of Chemical Engineering,
Indian Institute of Science, Bangalore