[gmx-users] Showing different RMSD values

[Seera Suryanarayana]

Dear gromacs users

I have done simulations for 100ns two times with similar conditions of 20
residue length peptide. I have plotted the RMSD graph. The average RMSD
values for simulations are 0.486 and 0.4102. My question is why I didn't
get similar average RMSD values even though the conditions for simulations
are similar?

Thanks in advance
Surya
Graduate student
India.