[gmx-users] Fwd: Segmentation fault (core dumped) in g_mmpbsa

[neha chaudhary]

Hi,

I tried to compile g_mmpbsa with APBS but no success. I am facing the
following error while cmake:

-- Found z library: /usr/lib/x86_64-linux-gnu/libz.so
CMake Error at cmake/FindGROMACS.cmake:203 (list):
  list index: 2 out of range (-2, 1)
Call Stack (most recent call first):
  src/CMakeLists.txt:62 (find_package)


-- Found Gromacs include directory: /usr/local/gromacs/include
-- Configuring incomplete, errors occurred!

Please help.

Thanks.

*Neha*




On Wed, Aug 30, 2017 at 10:42 AM, neha chaudhary <nehachaudhary769 at gmail.com
> wrote:

> Hi,
>
> I will download and install APBS and try again.
>
> I have already tried pre-compiled version of g_mmpbsa from the link you
> suggested.
>
> Thanks
>
> Best Regards,
>
> *Neha*
>
> Research Scholar,
> Centre for Computational Biology and Bioinformatics,
> School of Life Sciences,
> Central University of Himachal Pradesh,
>
>
>
>
>
> On Wed, Aug 30, 2017 at 10:38 AM, Nikhil Maroli <scinikhil at gmail.com>
> wrote:
>
>> Hell,
>>
>> Download APBS and install it then use the binary package of g_mmpbsa. or
>> see here:
>>
>> Pre-compiled executable program
>>
>> Pre-compiled program does not require any external library or GROMACS and
>> APBS package. These programs are standalone and without any dependency.
>> Download, extract and use it.
>>
>>
>> http://rashmikumari.github.io/g_mmpbsa/Download-and-Installation.html
>> --
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>
>