[gmx-users] Bug?! Lost particles while sorting
ramezanpour.mohsen at gmail.com
Thu Aug 31 15:04:30 CEST 2017
Thanks for your reply.
I tried but I was not sure how to do so.
May I send the corresponding files to your personal email, instead?
On Wed, Aug 30, 2017 at 6:25 PM, Mark Abraham <mark.j.abraham at gmail.com>
> That particular output indicates that the code is not working as intended.
> Please open an issue on the GROMACS redmine and attach the tpr, the log
> file from your run, and and instructions on how to reproduce.
> On Wed, 30 Aug 2017 19:34 Mohsen Ramezanpour <ramezanpour.mohsen at gmail.com
> > Dear Gromacs users,
> > I am running simulations using Gromacs version 2016.3 while using GPU.
> > I get an error in my simulations as follows:
> > Program: gmx mdrun, version 2016.3
> > Source file: src/gromacs/mdlib/nbnxn_grid.cpp (line 404)
> > MPI rank: 15 (out of 16)
> > Software inconsistency error:
> > Lost particles while sorting
> > For more information and tips for troubleshooting, please check the
> > website at http://www.gromacs.org/Documentation/Errors
> > Googling the error I found that there were relevant bugs before
> > by Dr. Berk Hess):
> > https://redmine.gromacs.org/issues/1379
> > https://redmine.gromacs.org/issues/1153
> > However, they should have been fixed in the newer versions as mentioned
> > the above links.
> > Can someone please let me know what the problem could be in this case?
> > Many thanks in advance,
> > Cheers,
> > Mohsen
> > --
> > *Rewards work better than punishment ...*
> > --
> > Gromacs Users mailing list
> > * Please search the archive at
> > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> > posting!
> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> > * For (un)subscribe requests visit
> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> > send a mail to gmx-users-request at gromacs.org.
> Gromacs Users mailing list
> * Please search the archive at http://www.gromacs.org/
> Support/Mailing_Lists/GMX-Users_List before posting!
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
*Rewards work better than punishment ...*
More information about the gromacs.org_gmx-users