[gmx-users] constraining CoM of two proteins individually

Irem Altan irem.altan at duke.edu
Thu Feb 9 20:22:08 CET 2017


Thanks. In that case, is it possible to use a flat-bottomed potential?

Best,
Irem

> On Feb 6, 2017, at 1:13 PM, Justin Lemkul <jalemkul at vt.edu> wrote:
> 
> 
> 
> On 2/6/17 10:06 AM, Irem Altan wrote:
>> Hi,
>> 
>> I have a system that consists of two proteins separated by a certain distance. I want to keep this distance constant by constraining the center of mass of the two proteins individually. How can I do this?
>> 
> 
> If you just want to maintain a distance, use a biasing potential via the pull code.
> 
> -Justin
> 
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