[gmx-users] Adding water to specific part of a box
nerafiee at ipm.ir
Mon Feb 13 10:23:06 CET 2017
I mean adding water above the membrane bilayer and not below it for example. There is an option in VMD in Selection part, which allows the user remove water molecules from z>(upper bond) and z<(lower bond), but I don't know if there is any option which allows you insert water molecules like that!
----- Original Message -----
From: "Mohamad Koohi-Moghadam" <m.koohi.m at gmail.com>
To: gmx-users at gromacs.org
Sent: Monday, February 13, 2017 12:41:10 PM
Subject: Re: [gmx-users] Adding water to specific part of a box
What do you mean by "specif part"? For example just in binding site of
protein-ligand and not in other part?
On Mon, Feb 13, 2017 at 5:02 PM, Neda Rafiee <nerafiee at ipm.ir> wrote:
> Dear users,
> Any one knows how to add water molecules only to specific parts of a
> system in GROMACS?
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