[gmx-users] Trjconv problem invalid argument

[Poncho Arvayo Zatarain]

Ok, so should i write trjconv before -ng 3, like gmx_gpu density trjconv -ng 3 -f file.xtc -s file.tpr -o out.xtc -skip 100 or donde write -ng in the command line?


Thanks

________________________________
De: gromacs.org_gmx-users-bounces at maillist.sys.kth.se <gromacs.org_gmx-users-bounces at maillist.sys.kth.se> en nombre de Justin Lemkul <jalemkul at vt.edu>
Enviado: martes, 14 de febrero de 2017 09:53 a. m.
Para: gmx-users at gromacs.org
Asunto: Re: [gmx-users] Trjconv problem invalid argument



On 2/14/17 12:45 PM, Poncho Arvayo Zatarain wrote:
>
>
> Hello Gromacs users: I want to obtain the density of a system using the
> command: gmx_gpu density -ng trjconv -f file.xtc -s file.tpr -o out.xtc -skip
> 100, but the following error appears: Invalid command argument: trjconv. What
> is wrong with trjconv? I am using gromacs 5.0.3
>

Nothing is wrong with trjconv, but your command is attempting to execute trjconv
as an argument to gmx density -ng, which is complete nonsense.

-Justin


--
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul
[http://mackerell.umaryland.edu/~jalemkul/Images/lemkul_small.jpg]<http://mackerell.umaryland.edu/~jalemkul>

Welcome to my site! - University of Maryland, Baltimore<http://mackerell.umaryland.edu/~jalemkul>
mackerell.umaryland.edu
Welcome to my site! To learn more about me and the work I am doing, please use the navigation links above.




==================================================
--
Gromacs Users mailing list

* Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
GMX-Users List - Gromacs<http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List>
www.gromacs.org
This is the main discussion forum for users of GROMACS and related software. Subscribe, unsubscribe or change your preferences through gmx-users Admin page.




* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Mailing Lists - Gromacs<http://www.gromacs.org/Support/Mailing_Lists>
www.gromacs.org
The three mailing lists (see the menu items on the left) have slightly different purposes, and you might not be interested in subscribing to all of them:




* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.
gromacs.org_gmx-users Info Page - Royal Institute of ...<https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users>
maillist.sys.kth.se
gromacs.org_gmx-users -- Discussion list for GROMACS users About gromacs.org_gmx-users