[gmx-users] Question regarding coarse-graining and all-atom structure

[Peter Kroon]

insane will make a new bilayer for you, not forward-map an atomistic
one. Maybe backwards does what you want, although it's usually used in
the other direction.
http://cgmartini.nl/index.php/tools2/resolution-transformation


Peter


On 18-02-17 23:14, Justin Lemkul wrote:
>
>
> On 2/18/17 2:39 PM, ali.khourshaei71 at student.sharif.edu wrote:
>> Dear Gromacs users,
>>
>> Is there any script I can use to coarse-grain ( based on martini
>> forcefield) my lipid bilayer all-atom structure ( based on berger force
>> field)? I know Martinize.py has been published, But it is confined to
>> Protein I think.
>>
>
> Maybe http://www.cgmartini.nl/index.php/downloads/tools/239-insane is
> what you want.
>
> -Justin
>