[gmx-users] gmx order has no output
Мижээ Батсайхан
b.mijiddorj at gmail.com
Tue Feb 21 09:18:07 CET 2017
Dear gmx users,
I run heterogeneous membrane simulation which consists of several different
type of lipids. Now I would like to analysis of order parameters.
I used following command for sn-2 order parameters.
gmx order -s ../step7_1.tpr -f ../nopbc.xtc -n sn2.ndx -od deuter_sn2.xvg
-o order-sn2.xvg -d z -nr ../index.ndx
in the result file, only header rows printed, and there is no data as
following
*****************************************
# Created by:
# :-) GROMACS - gmx order, VERSION 5.1 (-:
#
# Executable: /usr/local/gromacs/5.1.0/bin/gmx
# Data prefix: /usr/local/gromacs/5.1.0
# Command line:
# gmx order -s ../step7_1.tpr -f ../nopbc.xtc -n sn2.ndx -od
deuter_sn2.xvg -o order-sn2.xvg -d z -nr ../index.ndx
# gmx order is part of G R O M A C S:
#
# Green Red Orange Magenta Azure Cyan Skyblue
#
@ title "Order tensor diagonal elements"
@ xaxis label "Atom"
@ yaxis label "S"
@TYPE xy
*****************************************
Do you have an explain and any suggests, please?
Best regards,
Mijiddorj
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