[gmx-users] UMBRELLA SAMPLING

Subashini .K subashinik at hotmail.com
Wed Feb 22 05:41:55 CET 2017


Hi gromacs users,



I want to calculate the binding energy (ΔGbind) using umbrella sampling method (between protein and ligand which is solvated in water)


How to custom index groups for the pulling simulation?


The protein under consideration has only one chain A.


Thanks,

Subashini.K



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