[gmx-users] VISUALIZING PROTEIN FOLDING

[Mark Abraham]

Hi,

On Sat, Jan 21, 2017 at 7:20 AM Subashini .K <subashinik at hotmail.com> wrote:

> Hi gromacs users,
>
>
> Through NVT equilibration, had obtained nvt.gro and nvt.trr.
>
> Are these files sufficient to visualize protein folding?
>

They are enough to see a protein wiggle. How long does a protein take to
fold, in vivo? How does that compare to your simulation length? (Hint: not
favourably)


>
>
> What option in VMD has to be explored to observe protein folding?
>

The VMD website has some good tutorials and demonstrations.

Mark


>
> Thanks,
> Subashini.K
>
>
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