[gmx-users] simulation of ternary complex

[Amir Zeb]

I want to simulate ternary complex of protein -DNA -ligand..Is it possible
to simulate it combinely?

Yeah sure, you can, your order might be protein-DNA-ligand during topology
development and gro file format

good luck

On Tue, Jan 24, 2017 at 2:25 AM, maria khan <mariabiochemist1 at gmail.com>
wrote:

> Dear gromacs Users..
>
> I want to simulate ternary complex of protein -DNA -ligand..Is it possible
> to simulate it combinely?
>
> secondly..Gromacs has no graphical interface to visualize results..how can
> we resolve this issue..Using VMD i have some issues regarding
> trajectories..
>
> Regards..
>
> Maria khan.
>
> ICS,,university of peshawar..
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