[gmx-users] Protein-Ligand Complex MD simulation : Number of Hydrogen bond ; Options to Choose

[Adarsh V. K.]

Dear all,

Protein-ligand complex MD simulation using Gromacs 5.1.4 (Drug discovery)

Can you please tell me command for Number of Hydrogen bond plot?

It is # gmx hbond...

But what option we have to choose, apart from Ligand (13)

Is it (option after the command),

protein

protein-H

side chain

side chain-H

Regards,
Adarsh V. K.