[gmx-users] Pulling occurs in the smaller side of reaction coordinate

[faride badalkhani]

Dear Gromacs users,

I have a question regarding generating configurations in US simulations. I
have generate 500 frames in the z-direction. However, pulling does not
occur in the larger side of the box. The ligand leaves the box from the
smaller side and then enters from the other side. Does it affect the US
results?

Regards,
F.