[gmx-users] DNa topology error.

Mark Abraham mark.j.abraham at gmail.com
Tue Jul 11 17:41:56 CEST 2017


pdb2gmx found a residue called DG and found an rtp entry that matched it.
It just didn't find an O5' atom within it. You should also be able to find
that residue.


On Tue, Jul 11, 2017 at 5:26 PM maria khan <mariabiochemist1 at gmail.com>

> Thanks Mark Abraham.
> i would like to share my pdb file as still i dont understand the error as
> well as your answer,kindly look at this then explain it.
> it cant be shared as the file is large.i checked the file in front of
> residue 9,there is no DG at all .All along the chains is DA.
> regards.
> --
> Gromacs Users mailing list
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.

More information about the gromacs.org_gmx-users mailing list