[gmx-users] error message: Invalid transform ...

Mark Abraham mark.j.abraham at gmail.com
Fri Jul 28 18:14:40 CEST 2017


Hi,

The QM/MM code is essentially untested and unmaintained and wasn't
developed for that version of GAUSSIAN, so you're dicing with death. Death
looks like he's rolling well. ;-) I recommend using either the exact
software versions used in published work, or some other package.

Mark

On Fri, 28 Jul 2017 17:52 Clinton King <clintonking36 at chem.byu.edu> wrote:

> No, I haven't been changing the code. I have been doing mixed qm/mm (using
> Gaussian 09 for the qm calculations) with some frozen atoms in the qm
> region. There were two changes I made to this run that altered it from
> previously successful runs: I increased the time step slightly, and I added
> a gaussian keyword to allow the gaussian computation steps to tolerate
> close interatomic distances. I will continue to troubleshoot and send an
> update post if I learn any more about what might have caused this error
> message.
>
> --
> Clinton King
> Graduate Student
> Chemistry Department
> Brigham Young University
>
>
> > Message: 2
> > Date: Fri, 28 Jul 2017 07:10:57 +0000
> > From: Mark Abraham <mark.j.abraham at gmail.com>
> > To: gmx-users at gromacs.org, gromacs.org_gmx-users at maillist.sys.kth.se
> > Subject: Re: [gmx-users] error message: Invalid transform ...
> > Message-ID:
> >         <CAMNuMASYJu1vjiP-ogDaAsHX68=w7qVDgx-YPZPkbFRNnLBSXw at mail.
> > gmail.com>
> > Content-Type: text/plain; charset="UTF-8"
> >
> > Hi,
> >
> > That's a new one for me ;-) So new that I assume you were changing the
> > code?
> >
> > Mark
> >
> > On Fri, 28 Jul 2017 00:51 Clinton King <clintonking36 at chem.byu.edu>
> wrote:
> >
> > > Has anybody ever seen the following error message before?
> > >
> > >
> > > Program:     gmx mdrun, version 2016.1
> > > Source file: src/gromacs/fft/parallel_3dfft.cpp (line 173)
> > >
> > > *Fatal error:*
> > > *Invalid transform. Plan and execution don't match regarding
> > reel/complex*
> > >
> > >
> > > --
> > > Clinton King
> > > Graduate Student
> > > Chemistry Department
> > > Brigham Young University
> > > --
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> >
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