[gmx-users] "cmake" failed to install

[ZHANG Cheng]

Dear Mark and Mario,
Thank you very much. I delete the gromacs and redo the cmake and it works now.


Yours sincerely
Cheng




------------------ Original ------------------
From:  "mario";<mario at exactas.unlpam.edu.ar>;
Date:  Thu, Jun 1, 2017 04:07 PM
To:  "ZHANG Cheng"<272699575 at qq.com>; 
Cc:  "mario"<mario at exactas.unlpam.edu.ar>; "gmx-users"<gmx-users at gromacs.org>; "gromacs.org_gmx-users"<gromacs.org_gmx-users at maillist.sys.kth.se>; 
Subject:  Re: Re:  [gmx-users] "cmake" failed to install



Seems to be an old problem. You should read this

https://mailman-1.sys.kth.se/pipermail/gromacs.org_gmx-users/2015-May/097312.html

> After following Mario's link, I still could not solve it. The same problem
> happens.
>
>
> My command line is:
>
>
> lee at ubuntu:~/Jef/gromacs/gromacs-5.1.4/build$ cmake ..
> -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
> -- The CXX compiler identification is GNU 4.8.4
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- No compatible CUDA toolkit found (v4.0+), disabling native GPU
> acceleration
> -- Performing Test CXXFLAGS_PRAGMA
> -- Performing Test CXXFLAGS_PRAGMA - Success
> -- Performing Test CXXFLAGS_WARN
> -- Performing Test CXXFLAGS_WARN - Success
> -- Performing Test CXXFLAGS_WARN_EXTRA
> -- Performing Test CXXFLAGS_WARN_EXTRA - Success
> -- Performing Test CXXFLAGS_WARN_UNDEF
> -- Performing Test CXXFLAGS_WARN_UNDEF - Success
> -- Performing Test CXXFLAGS_WARN_REL
> -- Performing Test CXXFLAGS_WARN_REL - Success
> -- Performing Test CXXFLAGS_EXCESS_PREC
> -- Performing Test CXXFLAGS_EXCESS_PREC - Success
> -- Performing Test CXXFLAGS_COPT
> -- Performing Test CXXFLAGS_COPT - Success
> -- Performing Test CXXFLAGS_NOINLINE
> -- Performing Test CXXFLAGS_NOINLINE - Success
> CMake Warning at cmake/gmxTestCompilerProblems.cmake:44 (message):
>   The versions of the C and C++ compilers do not match (4.8.2 and 4.8.4,
>   respectively).  Mixing different C/C++ compilers can cause problems.
> Call Stack (most recent call first):
>   CMakeLists.txt:310 (gmx_test_compiler_problems)
>
>
>
>
> CMake Error at cmake/gmxManageSimd.cmake:67 (message):
>   Cannot find AVX compiler flag.  Use a newer compiler, or choose SSE4.1
> SIMD
>   (slower).
> Call Stack (most recent call first):
>   cmake/gmxManageSimd.cmake:261
> (gmx_give_fatal_error_when_simd_support_not_found)
>   CMakeLists.txt:648 (gmx_manage_simd)
>
>
>
>
> -- Configuring incomplete, errors occurred!
> See also
> "/home/lee/Jef/gromacs/gromacs-5.1.4/build/CMakeFiles/CMakeOutput.log".
> See also
> "/home/lee/Jef/gromacs/gromacs-5.1.4/build/CMakeFiles/CMakeError.log".
>
>
>
>
>
> ------------------ Original ------------------
> From:  "mario";<mario at exactas.unlpam.edu.ar>;
> Date:  Thu, Jun 1, 2017 02:44 PM
> To:  "gmx-users"<gmx-users at gromacs.org>;
> Cc:  "gromacs.org_gmx-users"<gromacs.org_gmx-users at maillist.sys.kth.se>;
> "ZHANG Cheng"<272699575 at qq.com>;
> Subject:  Re: [gmx-users] "cmake" failed to install
>
>
>
> Dear Cheng:
> I solved that problem by following step by step instructions of the next
> page:
>
> https://bioinformaticsreview.com/20151126/how-to-install-gromacs-5-x-x-on-linux-ubuntu-14-04-lts/
>
> Best Regards
> Mario Campo
> Dpto Física - UNLPam
> La Pampa Argentina
>
>> Dear Gromacs,
>> I did the below on Ubuntu 14.04:
>>
>>
>> tar xfz gromacs-5.1.4.tar.gz
>> cd gromacs-5.1.4
>> mkdir build
>> cd build
>>
>>
>>
>> Then, I got error message when running:
>> cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
>>
>>
>> The error log files can be found here:
>> https://1drv.ms/f/s!AjIs-W_id1LzobZfGThismE4so_SRQ
>>
>>
>> Can I ask how to solve this?
>>
>>
>> Thank you.
>>
>>
>> Yours sincerely
>> Cheng
>> --
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