[gmx-users] Interpretation of RMSD matrix

[Mark Abraham]

Hi,

I suggest you decide what you want to observe before choosing a tool to
observe with :-) A telescope is no good for micro-organisms.

Mark

On Fri, 2 Jun 2017 17:20 Apramita Chand <apramita.chand at gmail.com> wrote:

> Dear All,
> I would be grateful if you could help me with links to relevant
> papers/websites/sources on how to interpret RMSD matrices when comparing
> all frames of   single trajectory to reference structure and also when
> comparing two different trajectories.
>
> I am taking the reference structure from the input .tpr file. What in your
> opinion, is a better option to compare when taking RMSD? The starting
> structure .gro file or the .tpr file(after equilibration) ?
>
>
> Yours sincerely
> Apramita
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>