[gmx-users] RMSD analysis

[RAHUL SURESH]

Dear Users

*Exp procedure:*
I have simulated the protein monomer for 150ns. Using the 150ns conformer,
ligand is docked to the protein using autodock and the simulation is
carried out for 50ns.

*Analysis:*

Is it possible to compare my RMSD, RMSF, ROG analysis of complex system
with that of monomer? If yes which part of the monomer trajectory should be
considered.?

Thank you

-- 
*Regards,*
*Rahul Suresh*
*Research Scholar*
*Bharathiar University*
*Coimbatore*