[gmx-users] Ramachandran plot

[Mark Abraham]

Hi,

Sounds like your choice of dihedrals doesn't match your system. How did you
select them?

Mark

On Wed, 7 Jun 2017 08:41 RAHUL SURESH <drrahulsuresh at gmail.com> wrote:

> Dear Users
>
> When I try to execute ramachandran plot analysis, I get the following note
> like "Dihedral around 5809,5816 not found in topology. Using mult=3"
> (nearly 30-40 dihedrals). What is it about?
>
> Input is just protein structure extended upto 150ns.
>
> --
> *Regards,*
> *Rahul Suresh*
> *Research Scholar*
> *Bharathiar University*
> *Coimbatore*
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>