[gmx-users] WARNING: WARNING: Residue 1 named MET of a molecule in the input file was mapped to an entry in the topology database, but the atom H used in an interaction of type angle in that entry is not found in the input file. Perhaps your atom and/or residue naming needs to be fixed.

[Rana Rehan Khalid]

dear sir

I remove the hydrogen from my protein before creating the .top file rather
then use ignore hydrogen command kindly tell me is it right to remove the
hydrogen before simulation next gromacs steps