[gmx-users] (no subject)

[Shivangi Agarwal]

Hi
But it is broken. ..
strand with proline with three odr residues has been broken and visible...
i have Checked in vmd and pymol
On 21 Jun 2017 17:16, "Mark Abraham" <mark.j.abraham at gmail.com> wrote:

> Hi,
>
> On Wed, Jun 21, 2017 at 1:21 PM Shivangi Agarwal <
> shivangi.agarwal800 at gmail.com> wrote:
>
> > Hello to all gmx users
> >
> > I am performing protein ligand complex MD simulation but my protein
> > structure has been broken during energy minimization process.
> >
>
> It's not broken, but rather in an unexpected representation. See
> http://www.gromacs.org/Documentation/Terminology/
> Periodic_Boundary_Conditions
> for
> background and suggestions.
>
> Mark
>
>
> > What may be the suitable reason? How I can solve this?
> > Your support is highly appreciated
> > --
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