[gmx-users] Genion

[Sergio Manzetti]

Hello, genion worked, and grompp was used to run the output conf from genion. Mdrun minimized all OK, however, mdrun produced a counfout.gro file that no longer contains the Na Cl ions added to the system. When setting up the simulation, the input confout.gro has no Na Cl ions, and the procedure is therefore not working. 

Why is this so? Does one have to do the genion procedure each time one wants to use gromp with a new mdp file? 

Sergio Manzetti 

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