[gmx-users] position of water molecules during the simulation time

[Nikhil Maroli]

Dear all,

I wanted to calculate the position of the water molecules during the
simulation time. This is for understanding the movements of water molecules
through a channel protein. How I can get this information using gromacs.

I'm looking for something like this in Fig (b)

https://drive.google.com/file/d/0BxaQk_pcR9viS3I3NDlKSURuUGs/view?usp=sharing
-- 
Regards,
Nikhil Maroli