alexanderwien2k at gmail.com
Fri May 5 19:37:55 CEST 2017
Dear Gromacs user,
I want to study the interaction between a nanoparticle(5 nm diameter) and
some heptapeptide around the nanoparticle in aqueous solution. I put
in the center of a box and the rest are around it.
I was wondering if I should use PBC (periodic boundary condition) in such a
system? What is the advantage of the using PBC here?
The disadvantage of using PBC here is that a very big box should be used to
avoid interaction between a peptide and another peptide in the adjacent
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