[gmx-users] Lipid Simulation Analysis

Daniel Bauer bauer at cbs.tu-darmstadt.de
Wed May 31 18:22:53 CEST 2017


First of all you can try to reproduce basic lipid properties as the area
per lipid and bilayer thickness. Both can be easily calculated from the
position of lipid headgroups.

Other useful properties is the diffusion rate of lipids (accessable by
calculating the mean square displacement) and the deuterium order.

Best regards!

On 31.05.2017 15:39, Mr. Zaved Hazarika wrote:
> Hello Nikhil Maroli
> Basically I am new to lipid bilayer simulation. As of now I don't have any
> particular objective. I am trying to learn lipid bilayer simulation.
> Any suggestion would be great.
> How can I check the stability of my simulated bilayer?
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Don't trust atoms, they make up everything.

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