[gmx-users] Gmx minimdist

farial tavakoli farial.tavakoli at ymail.com
Tue Nov 7 10:21:02 CET 2017

 blockquote, div.yahoo_quoted { margin-left: 0 !important; border-left:1px #715FFA solid !important; padding-left:1ex !important; background-color:white !important; }  Dear gmx users
I am trying to analyz the minimum distance between periodic images,l and need to use  the .xtc file without jump, so issued gmx trjconv:Gmx trjconv -f .xtc  -o new file.xtc -pbc nojump -center
But when bring my .gro and new .xtc files in vmd , my new xtc file has still jumps. I studied gmx trjconv maneytimes but couldnt issue a command that works well. Would you please clear gmx trjconv to me?I would be really appreciated it if someone clarify it to me. 
Thanks in advanceFarial
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