[gmx-users] There is no domain decomposition for n nodes that is compatible with the given box and a minimum cell size of x nm
jalemkul at vt.edu
Thu Nov 30 00:15:16 CET 2017
On 11/29/17 5:43 PM, MD wrote:
> Hi folks,
> I got a fatal error when running em.mdp. Do you think if it is the .mdp
> that is causing this issue?
> My command line is : gmx mdrun -v -deffnm em
> The Fatal error:
> "There is no domain decomposition for 40 ranks that is compatible with the
> given box and a minimum cell size of 2.42098 nm. Change the number of ranks
> or mdrun option -rdd"
Try Google. This error has been asked and answered a hundred times over.
Justin A. Lemkul, Ph.D.
Virginia Tech Department of Biochemistry
303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061
jalemkul at vt.edu | (540) 231-3129
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