[gmx-users] Diffusion coefficient

Sohaib. Mohammed sohaibmohammed10 at gmail.com
Thu Sep 7 21:08:03 CEST 2017

Hey Users,

I want to calculate the diffusion coefficient using gmx msd. I want to
divide the box into slices of 5 A parallel to z axis and calculate the
diffusion coefficient for each slice. My question is how to make these
slices, I've tried gmx trajconv but didn't work with me. I believe it's
quite simple and provided by gromacs, but I am struggling with it.
Appreciate any idea on how to make these slices.

Thank you,

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