[gmx-users] DSSP executable

Deep kumar deepak.choubey86 at gmail.com
Mon Sep 11 17:46:12 CEST 2017


Thanks Marc!

On Mon, Sep 11, 2017 at 6:07 PM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> You're reading too far into http://swift.cmbi.ru.nl/gv/dssp/. The first
> two
> sentences are useful for you ;-)
>
> Mark
>
> On Mon, Sep 11, 2017 at 5:05 PM Deep kumar <deepak.choubey86 at gmail.com>
> wrote:
>
> > Hello All,
> >
> > Can someone please help me get the "dssp" executable? For secondary
> > structure analysis.
> >
> > I did this:
> >
> > rsync -avz rsync://rsync.cmbi.ru.nl/dssp/ /path_to_dssp/
> >
> > This downloaded all dssp pdb files but no executable. I am doing this
> > because I got the error on gromacs run.
> >
> > Fatal error:
> >
> > DSSP executable (/usr/local/bin/dssp) does not exist (use setenv DSSP)
> >
> > I would really appreciate help to resolve this problem.
> >
> > Thanks
> > --
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