[gmx-users] *** Spam ? ***Re: Changing position restraints force in GMX

Sergio Manzetti sergio.manzetti at fjordforsk.no
Fri Sep 15 14:47:20 CEST 2017


Sounds complex! 

Thanks Justin 



Sergio Manzetti 

[ http://www.fjordforsk.no/logo_hr2.jpg ] 

[ http://www.fjordforsk.no/ | Fjordforsk AS ] [ http://www.fjordforsk.no/ |   ] 
Midtun 
6894 Vangsnes 
Norge 
Org.nr. 911 659 654 
Tlf: +47 57695621 
[ http://www.oekolab.com/ | Økolab  ] | [ http://www.nanofact.no/ | Nanofactory  ] | [ http://www.aq-lab.no/ | AQ-Lab  ] | [ http://www.phap.no/ | FAP ] 



From: "Justin Lemkul" <jalemkul at vt.edu> 
To: "gmx-users" <gmx-users at gromacs.org> 
Sent: Friday, September 15, 2017 1:59:33 PM 
Subject: *** Spam ? ***Re: [gmx-users] Changing position restraints force in GMX 

On 9/15/17 4:14 AM, Sergio Manzetti wrote: 
> Hi, has anyone experience with changing position restrains for DNA in GMX? In case, is it only to change the figure "1" to "0.75" for instance in the itp file? 
> 

If you want to change the magnitude of the restraints, you need to generate a 
new file. The "1" in the file is the restraint function type, not a prefactor 
(see the manual). 

-Justin 

-- 
================================================== 

Justin A. Lemkul, Ph.D. 
Assistant Professor 
Virginia Tech Department of Biochemistry 

303 Engel Hall 
340 West Campus Dr. 
Blacksburg, VA 24061 

jalemkul at vt.edu | (540) 231-3129 
http://www.biochem.vt.edu/people/faculty/JustinLemkul.html 

================================================== 
-- 
Gromacs Users mailing list 

* Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! 

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists 

* For (un)subscribe requests visit 
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org. 


More information about the gromacs.org_gmx-users mailing list