[gmx-users] Binary mixture

spss4 at iacs.res.in spss4 at iacs.res.in
Fri Sep 15 17:28:56 CEST 2017


  ----- Message from Justin Lemkul <jalemkul at vt.edu> ---------
    Date: Fri, 15 Sep 2017 11:12:37 -0400
    From: Justin Lemkul <jalemkul at vt.edu>
Reply-To: gmx-users at gromacs.org
Subject: Re: [gmx-users] Binary mixture
      To: gmx-users at gromacs.org

> On 9/15/17 10:59 AM, spss4 at iacs.res.in wrote:
>> Hi all
>> I want to prepare a  cubic box of 6M urea. How many molecules of urea
and
>> how many water molecules should be added to the simulation box? How to
>> calculate these numbers? Please help me to solve this.
>
> Everything depends on the size of the box, which is somewhat arbitrary. 
> If you have a volume, you can easily calculate the number of molecules
> required to reach the desired molarity.
>
> -Justin
>
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> Justin A. Lemkul, Ph.D.
> Assistant Professor
> Virginia Tech Department of Biochemistry
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If my box size is 343 nm^3 then how I can calculate the number of urea and
water?

----- End message from Justin Lemkul <jalemkul at vt.edu> -----


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