[gmx-users] Diffusion coefficient

Sohaib. Mohammed sohaibmohammed10 at gmail.com
Sat Sep 16 22:05:41 CEST 2017

Any help!

On Saturday, September 16, 2017, Sohaib. Mohammed <
sohaibmohammed10 at gmail.com> wrote:

> Hey Users,
> I want to calculate the diffusion coefficient using gmx msd. I want to
> divide the box into slices of 5 A parallel to z axis and calculate the
> diffusion coefficient for each slice. My question is how to make these
> slices, I've tried gmx trajconv but didn't work with me. I believe it's
> quite simple and provided by gromacs, but I am struggling with it.
> Appreciate any idea on how to make these slices.
> Thank you,

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