[gmx-users] mpirun noticed that process rank 7 with PID 19160 on node compute-0-28.local exited on signal 11 (Segmentation fault).

[Mark Abraham]

Hi,

You're running a thread-MPI version of GROMACS, which is probably not what
you want to do if you're running mpirun. It should work even so, but
whatever quirks exist with SGE are unfortunately between you, its docs and
your cluster's docs and admins :-(

Mark

On Sun, Sep 17, 2017 at 7:23 AM Vidya R <vidyadevi2811 at gmail.com> wrote:

> My log file is provided in the link below
>
> Can you please look into it and let me know why the error arises?
>
> I am feeding my commands in SGE cluster.   When I run it in my login node,
> gmx mdrun -v -deffnm eql runs well
>
>
> But, through qsub command, (with 8 processors) It says,
>
> mpirun noticed that process rank 7 with PID 19160 on node
> compute-0-28.local exited on signal 11 (Segmentation fault).
>
> Please help me.
>
> I am unable to figure out, as to whether the problem is with the version of
> gromacs or the method of compiling.
>
>
>
> https://drive.google.com/file/d/0BxGqxeGwTDLbQW9OZDFuM1doUlU/view?usp=sharing
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