[gmx-users] restart nvt run

[Justin Lemkul]

On 2/4/18 8:50 AM, farial tavakoli wrote:
> Dear Justin
>
> Thank you so much for replying
>  I dont know exactly how I should use gmx trjcat command to 
> concatenate 2 .trr files (nvt.trr and traj.part0002.trr)
> I issued this command to merge them:
>
> gmx trjcat -f nvt.trr -o fixed.trr -cat
>
> but faced to this result:
>
> gmx trjcat -f nvt.trr -o fixed.trr -cat
>

This accomplishes nothing; nvt.trr and fixed.trr will be identical. The 
purpose of trjcat is to assemble multiple trajectory files (note in the 
help information, the -f argument specifies that it takes multiple 
files). You want:

gmx trjcat -f nvt.trr traj.part0002.trr -o fixed.trr

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

303 Engel Hall
340 West Campus Dr.
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jalemkul at vt.edu | (540) 231-3129
http://www.biochem.vt.edu/people/faculty/JustinLemkul.html

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