[gmx-users] GMX 2018 regression tests: cufftPlanMany R2C plan failure (error code 5)

Mark Abraham mark.j.abraham at gmail.com
Thu Feb 8 18:25:45 CET 2018


Hi,

Those all succeeded. Does make check now also succeed?

Mark

On Thu, Feb 8, 2018 at 6:24 PM Alex <nedomacho at gmail.com> wrote:

> Here you are:
>
> [==========] Running 35 tests from 7 test cases.
> [----------] Global test environment set-up.
> [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int
> [ RUN      ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks
> [       OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (5457 ms)
> [ RUN      ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks
> [       OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks
> (2861 ms)
> [ RUN      ] HostAllocatorTest/0.TransfersWithoutPinningWork
> [       OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (3254 ms)
> [ RUN      ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve
> [       OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve
> (2221 ms)
> [ RUN      ] HostAllocatorTest/0.TransfersWithPinningWorkWithCuda
> [       OK ] HostAllocatorTest/0.TransfersWithPinningWorkWithCuda (3801 ms)
> [ RUN      ] HostAllocatorTest/0.ManualPinningOperationsWorkWithCuda
> [       OK ] HostAllocatorTest/0.ManualPinningOperationsWorkWithCuda (2157
> ms)
> [ RUN      ] HostAllocatorTest/0.StatefulAllocatorUsesMemory
> [       OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (2179 ms)
> [----------] 7 tests from HostAllocatorTest/0 (21930 ms total)
>
> [----------] 7 tests from HostAllocatorTest/1, where TypeParam = float
> [ RUN      ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks
> [       OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (2739 ms)
> [ RUN      ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks
> [       OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks
> (2731 ms)
> [ RUN      ] HostAllocatorTest/1.TransfersWithoutPinningWork
> [       OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (3281 ms)
> [ RUN      ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve
> [       OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve
> (2164 ms)
> [ RUN      ] HostAllocatorTest/1.TransfersWithPinningWorkWithCuda
> [       OK ] HostAllocatorTest/1.TransfersWithPinningWorkWithCuda (3908 ms)
> [ RUN      ] HostAllocatorTest/1.ManualPinningOperationsWorkWithCuda
> [       OK ] HostAllocatorTest/1.ManualPinningOperationsWorkWithCuda (2202
> ms)
> [ RUN      ] HostAllocatorTest/1.StatefulAllocatorUsesMemory
> [       OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (2261 ms)
> [----------] 7 tests from HostAllocatorTest/1 (19287 ms total)
>
> [----------] 7 tests from HostAllocatorTest/2, where TypeParam =
> gmx::BasicVector<float>
> [ RUN      ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks
> [       OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (2771 ms)
> [ RUN      ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks
> [       OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks
> (2846 ms)
> [ RUN      ] HostAllocatorTest/2.TransfersWithoutPinningWork
> [       OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (3283 ms)
> [ RUN      ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve
> [       OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve
> (2131 ms)
> [ RUN      ] HostAllocatorTest/2.TransfersWithPinningWorkWithCuda
> [       OK ] HostAllocatorTest/2.TransfersWithPinningWorkWithCuda (3833 ms)
> [ RUN      ] HostAllocatorTest/2.ManualPinningOperationsWorkWithCuda
> [       OK ] HostAllocatorTest/2.ManualPinningOperationsWorkWithCuda (2232
> ms)
> [ RUN      ] HostAllocatorTest/2.StatefulAllocatorUsesMemory
> [       OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (2164 ms)
> [----------] 7 tests from HostAllocatorTest/2 (19261 ms total)
>
> [----------] 3 tests from AllocatorTest/0, where TypeParam =
> gmx::Allocator<float, gmx::HostAllocationPolicy>
> [ RUN      ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment
> [       OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms)
> [ RUN      ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment
> [       OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms)
> [ RUN      ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment
> [       OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms)
> [----------] 3 tests from AllocatorTest/0 (0 ms total)
>
> [----------] 3 tests from AllocatorTest/1, where TypeParam =
> gmx::Allocator<int, gmx::HostAllocationPolicy>
> [ RUN      ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment
> [       OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms)
> [ RUN      ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment
> [       OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms)
> [ RUN      ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment
> [       OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms)
> [----------] 3 tests from AllocatorTest/1 (0 ms total)
>
> [----------] 3 tests from AllocatorTest/2, where TypeParam =
> gmx::Allocator<gmx::BasicVector<float>, gmx::HostAllocationPolicy>
> [ RUN      ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment
> [       OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms)
> [ RUN      ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment
> [       OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms)
> [ RUN      ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment
> [       OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms)
> [----------] 3 tests from AllocatorTest/2 (0 ms total)
>
> [----------] 5 tests from PinnedMemoryCheckerTest
> [ RUN      ] PinnedMemoryCheckerTest.DefaultContainerIsRecognized
> [       OK ] PinnedMemoryCheckerTest.DefaultContainerIsRecognized (3248 ms)
> [ RUN      ] PinnedMemoryCheckerTest.NonpinnedContainerIsRecognized
> [       OK ] PinnedMemoryCheckerTest.NonpinnedContainerIsRecognized (2752
> ms)
> [ RUN      ] PinnedMemoryCheckerTest.PinnedContainerIsRecognized
> [       OK ] PinnedMemoryCheckerTest.PinnedContainerIsRecognized (2709 ms)
> [ RUN      ] PinnedMemoryCheckerTest.DefaultCBufferIsRecognized
> [       OK ] PinnedMemoryCheckerTest.DefaultCBufferIsRecognized (2675 ms)
> [ RUN      ] PinnedMemoryCheckerTest.PinnedCBufferIsRecognized
> [       OK ] PinnedMemoryCheckerTest.PinnedCBufferIsRecognized (2686 ms)
> [----------] 5 tests from PinnedMemoryCheckerTest (14071 ms total)
>
> [----------] Global test environment tear-down
> [==========] 35 tests from 7 test cases ran. (74549 ms total)
> [  PASSED  ] 35 tests.
>
>
> On Thu, Feb 8, 2018 at 10:00 AM, Szilárd Páll <pall.szilard at gmail.com>
> wrote:
>
> > It might help to know which of the unit test(s) in that group stall? Can
> > you run it manually (bin/gpu_utils-test) and report back the standard
> > output?
> >
> >
> > --
> > Szilárd
> >
> > On Thu, Feb 8, 2018 at 3:56 PM, Alex <nedomacho at gmail.com> wrote:
> >
> > > Nope, still persists after reboot and no other jobs running:
> > >  9/39 Test  #9: GpuUtilsUnitTests ................***Timeout  30.59 sec
> > >
> > > Any additional suggestions?
> > >
> > > --
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