[gmx-users] GMX 2018 regression tests: cufftPlanMany R2C plan failure (error code 5)
Mark Abraham
mark.j.abraham at gmail.com
Thu Feb 8 18:37:11 CET 2018
Hi,
Great. The manual run took 74.5 seconds, failing the 30 second timeout. So
the code is fine.
But you have some crazy large overhead going on - gpu_utils-test runs in 7s
on my 2013 desktop with CUDA 9.1.
Mark
On Thu, Feb 8, 2018 at 6:29 PM Alex <nedomacho at gmail.com> wrote:
> uh, no sir.
>
> > 9/39 Test #9: GpuUtilsUnitTests ................***Timeout 30.43 sec
>
>
> On Thu, Feb 8, 2018 at 10:25 AM, Mark Abraham <mark.j.abraham at gmail.com>
> wrote:
>
> > Hi,
> >
> > Those all succeeded. Does make check now also succeed?
> >
> > Mark
> >
> > On Thu, Feb 8, 2018 at 6:24 PM Alex <nedomacho at gmail.com> wrote:
> >
> > > Here you are:
> > >
> > > [==========] Running 35 tests from 7 test cases.
> > > [----------] Global test environment set-up.
> > > [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int
> > > [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks
> > > [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (5457 ms)
> > > [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocato
> > rAlwaysWorks
> > > [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocato
> > rAlwaysWorks
> > > (2861 ms)
> > > [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork
> > > [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (3254 ms)
> > > [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve
> > > [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve
> > > (2221 ms)
> > > [ RUN ] HostAllocatorTest/0.TransfersWithPinningWorkWithCuda
> > > [ OK ] HostAllocatorTest/0.TransfersWithPinningWorkWithCuda (3801
> > ms)
> > > [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkWithCuda
> > > [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkWithCuda
> > (2157
> > > ms)
> > > [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory
> > > [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (2179 ms)
> > > [----------] 7 tests from HostAllocatorTest/0 (21930 ms total)
> > >
> > > [----------] 7 tests from HostAllocatorTest/1, where TypeParam = float
> > > [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks
> > > [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (2739 ms)
> > > [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocato
> > rAlwaysWorks
> > > [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocato
> > rAlwaysWorks
> > > (2731 ms)
> > > [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork
> > > [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (3281 ms)
> > > [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve
> > > [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve
> > > (2164 ms)
> > > [ RUN ] HostAllocatorTest/1.TransfersWithPinningWorkWithCuda
> > > [ OK ] HostAllocatorTest/1.TransfersWithPinningWorkWithCuda (3908
> > ms)
> > > [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkWithCuda
> > > [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkWithCuda
> > (2202
> > > ms)
> > > [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory
> > > [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (2261 ms)
> > > [----------] 7 tests from HostAllocatorTest/1 (19287 ms total)
> > >
> > > [----------] 7 tests from HostAllocatorTest/2, where TypeParam =
> > > gmx::BasicVector<float>
> > > [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks
> > > [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (2771 ms)
> > > [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocato
> > rAlwaysWorks
> > > [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocato
> > rAlwaysWorks
> > > (2846 ms)
> > > [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork
> > > [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (3283 ms)
> > > [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve
> > > [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve
> > > (2131 ms)
> > > [ RUN ] HostAllocatorTest/2.TransfersWithPinningWorkWithCuda
> > > [ OK ] HostAllocatorTest/2.TransfersWithPinningWorkWithCuda (3833
> > ms)
> > > [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkWithCuda
> > > [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkWithCuda
> > (2232
> > > ms)
> > > [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory
> > > [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (2164 ms)
> > > [----------] 7 tests from HostAllocatorTest/2 (19261 ms total)
> > >
> > > [----------] 3 tests from AllocatorTest/0, where TypeParam =
> > > gmx::Allocator<float, gmx::HostAllocationPolicy>
> > > [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment
> > > [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0
> ms)
> > > [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment
> > > [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0
> > ms)
> > > [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment
> > > [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0
> > ms)
> > > [----------] 3 tests from AllocatorTest/0 (0 ms total)
> > >
> > > [----------] 3 tests from AllocatorTest/1, where TypeParam =
> > > gmx::Allocator<int, gmx::HostAllocationPolicy>
> > > [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment
> > > [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0
> ms)
> > > [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment
> > > [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0
> > ms)
> > > [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment
> > > [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0
> > ms)
> > > [----------] 3 tests from AllocatorTest/1 (0 ms total)
> > >
> > > [----------] 3 tests from AllocatorTest/2, where TypeParam =
> > > gmx::Allocator<gmx::BasicVector<float>, gmx::HostAllocationPolicy>
> > > [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment
> > > [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0
> ms)
> > > [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment
> > > [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0
> > ms)
> > > [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment
> > > [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0
> > ms)
> > > [----------] 3 tests from AllocatorTest/2 (0 ms total)
> > >
> > > [----------] 5 tests from PinnedMemoryCheckerTest
> > > [ RUN ] PinnedMemoryCheckerTest.DefaultContainerIsRecognized
> > > [ OK ] PinnedMemoryCheckerTest.DefaultContainerIsRecognized (3248
> > ms)
> > > [ RUN ] PinnedMemoryCheckerTest.NonpinnedContainerIsRecognized
> > > [ OK ] PinnedMemoryCheckerTest.NonpinnedContainerIsRecognized
> > (2752
> > > ms)
> > > [ RUN ] PinnedMemoryCheckerTest.PinnedContainerIsRecognized
> > > [ OK ] PinnedMemoryCheckerTest.PinnedContainerIsRecognized (2709
> > ms)
> > > [ RUN ] PinnedMemoryCheckerTest.DefaultCBufferIsRecognized
> > > [ OK ] PinnedMemoryCheckerTest.DefaultCBufferIsRecognized (2675
> > ms)
> > > [ RUN ] PinnedMemoryCheckerTest.PinnedCBufferIsRecognized
> > > [ OK ] PinnedMemoryCheckerTest.PinnedCBufferIsRecognized (2686
> ms)
> > > [----------] 5 tests from PinnedMemoryCheckerTest (14071 ms total)
> > >
> > > [----------] Global test environment tear-down
> > > [==========] 35 tests from 7 test cases ran. (74549 ms total)
> > > [ PASSED ] 35 tests.
> > >
> > >
> > > On Thu, Feb 8, 2018 at 10:00 AM, Szilárd Páll <pall.szilard at gmail.com>
> > > wrote:
> > >
> > > > It might help to know which of the unit test(s) in that group stall?
> > Can
> > > > you run it manually (bin/gpu_utils-test) and report back the standard
> > > > output?
> > > >
> > > >
> > > > --
> > > > Szilárd
> > > >
> > > > On Thu, Feb 8, 2018 at 3:56 PM, Alex <nedomacho at gmail.com> wrote:
> > > >
> > > > > Nope, still persists after reboot and no other jobs running:
> > > > > 9/39 Test #9: GpuUtilsUnitTests ................***Timeout 30.59
> > sec
> > > > >
> > > > > Any additional suggestions?
> > > > >
> > > > > --
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> > > > >
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