[gmx-users] GMX 2018 regression tests: cufftPlanMany R2C plan failure (error code 5)
Alex
nedomacho at gmail.com
Thu Feb 8 18:46:06 CET 2018
Are you suggesting that i should accept these results and install the 2018
version?
Thanks,
Alex
On Thu, Feb 8, 2018 at 10:43 AM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:
> Hi,
>
> PATH doesn't matter, only what ldd thinks matters.
>
> I have opened https://redmine.gromacs.org/issues/2405 to address that the
> implementation of these tests are perhaps proving more pain than usefulness
> (from this thread and others I have seen).
>
> Mark
>
> On Thu, Feb 8, 2018 at 6:41 PM Alex <nedomacho at gmail.com> wrote:
>
> > That is quite weird. We found that I have PATH values pointing to the old
> > gmx installation while running these tests. Do you think that could cause
> > issues?
> >
> > Alex
> >
> > On Thu, Feb 8, 2018 at 10:36 AM, Mark Abraham <mark.j.abraham at gmail.com>
> > wrote:
> >
> > > Hi,
> > >
> > > Great. The manual run took 74.5 seconds, failing the 30 second timeout.
> > So
> > > the code is fine.
> > >
> > > But you have some crazy large overhead going on - gpu_utils-test runs
> in
> > 7s
> > > on my 2013 desktop with CUDA 9.1.
> > >
> > > Mark
> > >
> > > On Thu, Feb 8, 2018 at 6:29 PM Alex <nedomacho at gmail.com> wrote:
> > >
> > > > uh, no sir.
> > > >
> > > > > 9/39 Test #9: GpuUtilsUnitTests ................***Timeout 30.43
> > sec
> > > >
> > > >
> > > > On Thu, Feb 8, 2018 at 10:25 AM, Mark Abraham <
> > mark.j.abraham at gmail.com>
> > > > wrote:
> > > >
> > > > > Hi,
> > > > >
> > > > > Those all succeeded. Does make check now also succeed?
> > > > >
> > > > > Mark
> > > > >
> > > > > On Thu, Feb 8, 2018 at 6:24 PM Alex <nedomacho at gmail.com> wrote:
> > > > >
> > > > > > Here you are:
> > > > > >
> > > > > > [==========] Running 35 tests from 7 test cases.
> > > > > > [----------] Global test environment set-up.
> > > > > > [----------] 7 tests from HostAllocatorTest/0, where TypeParam =
> > int
> > > > > > [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks
> > > > > > [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (5457
> ms)
> > > > > > [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocato
> > > > > rAlwaysWorks
> > > > > > [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocato
> > > > > rAlwaysWorks
> > > > > > (2861 ms)
> > > > > > [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork
> > > > > > [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork
> (3254
> > > ms)
> > > > > > [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCalling
> > > Reserve
> > > > > > [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCalling
> > > Reserve
> > > > > > (2221 ms)
> > > > > > [ RUN ] HostAllocatorTest/0.TransfersWithPinningWorkWithCu
> da
> > > > > > [ OK ] HostAllocatorTest/0.TransfersWithPinningWorkWithCu
> da
> > > (3801
> > > > > ms)
> > > > > > [ RUN ]
> > HostAllocatorTest/0.ManualPinningOperationsWorkWithCuda
> > > > > > [ OK ]
> > HostAllocatorTest/0.ManualPinningOperationsWorkWithCuda
> > > > > (2157
> > > > > > ms)
> > > > > > [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory
> > > > > > [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory
> (2179
> > > ms)
> > > > > > [----------] 7 tests from HostAllocatorTest/0 (21930 ms total)
> > > > > >
> > > > > > [----------] 7 tests from HostAllocatorTest/1, where TypeParam =
> > > float
> > > > > > [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks
> > > > > > [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (2739
> ms)
> > > > > > [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocato
> > > > > rAlwaysWorks
> > > > > > [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocato
> > > > > rAlwaysWorks
> > > > > > (2731 ms)
> > > > > > [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork
> > > > > > [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork
> (3281
> > > ms)
> > > > > > [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCalling
> > > Reserve
> > > > > > [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCalling
> > > Reserve
> > > > > > (2164 ms)
> > > > > > [ RUN ] HostAllocatorTest/1.TransfersWithPinningWorkWithCu
> da
> > > > > > [ OK ] HostAllocatorTest/1.TransfersWithPinningWorkWithCu
> da
> > > (3908
> > > > > ms)
> > > > > > [ RUN ]
> > HostAllocatorTest/1.ManualPinningOperationsWorkWithCuda
> > > > > > [ OK ]
> > HostAllocatorTest/1.ManualPinningOperationsWorkWithCuda
> > > > > (2202
> > > > > > ms)
> > > > > > [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory
> > > > > > [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory
> (2261
> > > ms)
> > > > > > [----------] 7 tests from HostAllocatorTest/1 (19287 ms total)
> > > > > >
> > > > > > [----------] 7 tests from HostAllocatorTest/2, where TypeParam =
> > > > > > gmx::BasicVector<float>
> > > > > > [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks
> > > > > > [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (2771
> ms)
> > > > > > [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocato
> > > > > rAlwaysWorks
> > > > > > [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocato
> > > > > rAlwaysWorks
> > > > > > (2846 ms)
> > > > > > [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork
> > > > > > [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork
> (3283
> > > ms)
> > > > > > [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCalling
> > > Reserve
> > > > > > [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCalling
> > > Reserve
> > > > > > (2131 ms)
> > > > > > [ RUN ] HostAllocatorTest/2.TransfersWithPinningWorkWithCu
> da
> > > > > > [ OK ] HostAllocatorTest/2.TransfersWithPinningWorkWithCu
> da
> > > (3833
> > > > > ms)
> > > > > > [ RUN ]
> > HostAllocatorTest/2.ManualPinningOperationsWorkWithCuda
> > > > > > [ OK ]
> > HostAllocatorTest/2.ManualPinningOperationsWorkWithCuda
> > > > > (2232
> > > > > > ms)
> > > > > > [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory
> > > > > > [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory
> (2164
> > > ms)
> > > > > > [----------] 7 tests from HostAllocatorTest/2 (19261 ms total)
> > > > > >
> > > > > > [----------] 3 tests from AllocatorTest/0, where TypeParam =
> > > > > > gmx::Allocator<float, gmx::HostAllocationPolicy>
> > > > > > [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAli
> gnment
> > > > > > [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAli
> gnment
> > (0
> > > > ms)
> > > > > > [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithA
> lignment
> > > > > > [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithA
> lignment
> > > (0
> > > > > ms)
> > > > > > [ RUN ]
> > AllocatorTest/0.VectorAllocatesAndReservesWithAlignment
> > > > > > [ OK ]
> > AllocatorTest/0.VectorAllocatesAndReservesWithAlignment
> > > (0
> > > > > ms)
> > > > > > [----------] 3 tests from AllocatorTest/0 (0 ms total)
> > > > > >
> > > > > > [----------] 3 tests from AllocatorTest/1, where TypeParam =
> > > > > > gmx::Allocator<int, gmx::HostAllocationPolicy>
> > > > > > [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAli
> gnment
> > > > > > [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAli
> gnment
> > (0
> > > > ms)
> > > > > > [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithA
> lignment
> > > > > > [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithA
> lignment
> > > (0
> > > > > ms)
> > > > > > [ RUN ]
> > AllocatorTest/1.VectorAllocatesAndReservesWithAlignment
> > > > > > [ OK ]
> > AllocatorTest/1.VectorAllocatesAndReservesWithAlignment
> > > (0
> > > > > ms)
> > > > > > [----------] 3 tests from AllocatorTest/1 (0 ms total)
> > > > > >
> > > > > > [----------] 3 tests from AllocatorTest/2, where TypeParam =
> > > > > > gmx::Allocator<gmx::BasicVector<float>,
> gmx::HostAllocationPolicy>
> > > > > > [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAli
> gnment
> > > > > > [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAli
> gnment
> > (0
> > > > ms)
> > > > > > [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithA
> lignment
> > > > > > [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithA
> lignment
> > > (0
> > > > > ms)
> > > > > > [ RUN ]
> > AllocatorTest/2.VectorAllocatesAndReservesWithAlignment
> > > > > > [ OK ]
> > AllocatorTest/2.VectorAllocatesAndReservesWithAlignment
> > > (0
> > > > > ms)
> > > > > > [----------] 3 tests from AllocatorTest/2 (0 ms total)
> > > > > >
> > > > > > [----------] 5 tests from PinnedMemoryCheckerTest
> > > > > > [ RUN ] PinnedMemoryCheckerTest.
> DefaultContainerIsRecognized
> > > > > > [ OK ] PinnedMemoryCheckerTest.
> DefaultContainerIsRecognized
> > > (3248
> > > > > ms)
> > > > > > [ RUN ] PinnedMemoryCheckerTest.
> NonpinnedContainerIsRecognized
> > > > > > [ OK ] PinnedMemoryCheckerTest.
> NonpinnedContainerIsRecognized
> > > > > (2752
> > > > > > ms)
> > > > > > [ RUN ] PinnedMemoryCheckerTest.PinnedContainerIsRecognized
> > > > > > [ OK ] PinnedMemoryCheckerTest.PinnedContainerIsRecognized
> > > (2709
> > > > > ms)
> > > > > > [ RUN ] PinnedMemoryCheckerTest.DefaultCBufferIsRecognized
> > > > > > [ OK ] PinnedMemoryCheckerTest.DefaultCBufferIsRecognized
> > > (2675
> > > > > ms)
> > > > > > [ RUN ] PinnedMemoryCheckerTest.PinnedCBufferIsRecognized
> > > > > > [ OK ] PinnedMemoryCheckerTest.PinnedCBufferIsRecognized
> > (2686
> > > > ms)
> > > > > > [----------] 5 tests from PinnedMemoryCheckerTest (14071 ms
> total)
> > > > > >
> > > > > > [----------] Global test environment tear-down
> > > > > > [==========] 35 tests from 7 test cases ran. (74549 ms total)
> > > > > > [ PASSED ] 35 tests.
> > > > > >
> > > > > >
> > > > > > On Thu, Feb 8, 2018 at 10:00 AM, Szilárd Páll <
> > > pall.szilard at gmail.com>
> > > > > > wrote:
> > > > > >
> > > > > > > It might help to know which of the unit test(s) in that group
> > > stall?
> > > > > Can
> > > > > > > you run it manually (bin/gpu_utils-test) and report back the
> > > standard
> > > > > > > output?
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Szilárd
> > > > > > >
> > > > > > > On Thu, Feb 8, 2018 at 3:56 PM, Alex <nedomacho at gmail.com>
> > wrote:
> > > > > > >
> > > > > > > > Nope, still persists after reboot and no other jobs running:
> > > > > > > > 9/39 Test #9: GpuUtilsUnitTests ................***Timeout
> > > 30.59
> > > > > sec
> > > > > > > >
> > > > > > > > Any additional suggestions?
> > > > > > > >
> > > > > > > > --
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