[gmx-users] Problems with trjconv

Poncho Arvayo Zatarain poncho_8629 at hotmail.com
Fri Feb 16 20:35:49 CET 2018

Hello Gomacs users: I have a problem with a lipid bilayer. The bilayers is inverted, the water is in the middle and the lipid tails are outside. How can i flip it to a correct way? I´m trying with gmx trjconv -f file.gro -s file.tpr -n index -o file.gro -pbc whole but nothing happens. In index i use option System. What can i do to flip the bilayer? should i use lipid and water options in index?

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