[gmx-users] Problems with trjconv

[Justin Lemkul]

On 2/16/18 3:00 PM, Poncho Arvayo Zatarain wrote:
> Where shud i see the answer Justin? Please tell me
>

Like any other post, in your email.

-Justin

> ________________________________
> De: gromacs.org_gmx-users-bounces at maillist.sys.kth.se <gromacs.org_gmx-users-bounces at maillist.sys.kth.se> en nombre de Justin Lemkul <jalemkul at vt.edu>
> Enviado: viernes, 16 de febrero de 2018 11:50 a. m.
> Para: gmx-users at gromacs.org
> Asunto: Re: [gmx-users] Problems with trjconv
>
>
>
> On 2/16/18 2:35 PM, Poncho Arvayo Zatarain wrote:
>> Hello Gomacs users: I have a problem with a lipid bilayer. The bilayers is inverted, the water is in the middle and the lipid tails are outside. How can i flip it to a correct way? I´m trying with gmx trjconv -f file.gro -s file.tpr -n index -o file.gro -pbc whole but nothing happens. In index i use option System. What can i do to flip the bilayer? should i use lipid and water options in index?
> I answered this earlier this morning. Please try what I suggested.
>
> -Justin
>
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-- 
==================================================

Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061

jalemkul at vt.edu | (540) 231-3129
http://www.biochem.vt.edu/people/faculty/JustinLemkul.html

==================================================