[gmx-users] Regarding No more replaceable solvent!
Dilip H N
cy16f01.dilip at nitk.edu.in
Mon Feb 19 07:14:32 CET 2018
Hello,
I added 10 Na+ and Cl- ions to the aminoacid-water system containing 512
molecules through the command
gmx genion -s em.tpr -o abc.gro -p topol.top -pname NA -nname CL -np 10 -nn
10
but now, i want to increase the concentration, so i want to add 45 Na+ and
Cl- ions (from calculation, the concentration for 45 ions is 5M...), but
when i give the commands:
gmx genion -s em.tpr -o glywi.gro -p topol.top -pname NA -nname CL -np 45
-nn 45
(or)
gmx genion -s em.tpr -o glywi.gro -p topol.top -pname NA -nname CL -conc 5
I am getting the error as:
No more replaceable solvent!
So, Is there any limit here..?? The maximum concentration that i can get is
2M (through -conc 2 command), and after that, if i change from -conc2 to
-conc3 etc., i am getting the same error as "No more replaceable solvent!".
Any suggestions are appreciated...
Thank you
--
With Best Regards,
DILIP.H.N
Ph.D. Student
<https://mailtrack.io/> Sent with Mailtrack
<https://chrome.google.com/webstore/detail/mailtrack-for-gmail-inbox/ndnaehgpjlnokgebbaldlmgkapkpjkkb?utm_source=gmail&utm_medium=signature&utm_campaign=signaturevirality>
More information about the gromacs.org_gmx-users
mailing list