[gmx-users] About rdf in membranes

[Justin Lemkul]

On 2/20/18 7:42 PM, Poncho Arvayo Zatarain wrote:
> The -xy is after or before the .ndx. I have this command gmx rdf -f file.xtc -s file.tpr -n file.ndx -xy -o file.xvg

It doesn't matter. It's a boolean flag so it can appear anywhere in the 
command line that doesn't disrupt any other argument/filename pair.

-Justin

>
> ________________________________
> De: gromacs.org_gmx-users-bounces at maillist.sys.kth.se <gromacs.org_gmx-users-bounces at maillist.sys.kth.se> en nombre de Justin Lemkul <jalemkul at vt.edu>
> Enviado: martes, 20 de febrero de 2018 04:33 p. m.
> Para: gmx-users at gromacs.org
> Asunto: Re: [gmx-users] About rdf in membranes
>
>
>
> On 2/20/18 7:03 PM, Poncho Arvayo Zatarain wrote:
>> Hello Gromacs Users: I want to calculate rdf in membranes. I read i need something like .xy and i´m a little confussed. The command will be: gmx rdf -f file.xtc -s file.tpr -n file.ndx -xy -o file.xvg=
> What point is confusing?
>
> -Justin
>
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-- 
==================================================

Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061

jalemkul at vt.edu | (540) 231-3129
http://www.biochem.vt.edu/people/faculty/JustinLemkul.html

==================================================